Capri HMM page - Revision history

Luca at 09:39, 21 June 2007

Luca — Thu, 21 Jun 2007 09:39:33 GMT

←Older revision		Revision as of 09:39, 21 June 2007
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	HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.		HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.
-		+	[[Image:Capri_HMM_page.gif\|right]]
	===Align===		===Align===
	Align menu allows to align sequences to a given HMM.		Align menu allows to align sequences to a given HMM.

Luca at 09:24, 21 June 2007

Luca — Thu, 21 Jun 2007 09:24:31 GMT

←Older revision		Revision as of 09:24, 21 June 2007
Line 1:		Line 1:
	HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.		HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.

-	~~;Frequently used functions.~~	+	===Align===
-	*''Aling'': aligning sequences to ~~the~~ HMM.	+	Align menu allows to align sequences to a given HMM.
-	*''Extract'': ~~extracting consensus or~~ a number of sequences ~~in agreement~~ with ~~the~~ HMM.	+	:* Sequences
-	*~~''SearchDB''~~: ~~searching databases with~~ the HMM.	+
		+	===Extract===
		+	Extract menu allows to extract features from a HMM.
		+	:* Sequences: compute a number of sequences compatible with a given HMM.
		+	:* Consensus: calculate the consensus of the HMM.
		+
		+	===SearchDB===
		+	SearchDB menu allows to search in sequence databases which are currently installed at CEINGE. It is possible to search by using:
		+	:* HMMsearch

Luca: New page: HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from th...

Luca — Wed, 20 Jun 2007 11:27:57 GMT

New page: HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from th...

New page

HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.

;Frequently used functions.
*''Aling'': aligning sequences to the HMM.
*''Extract'': extracting consensus or a number of sequences in agreement with the HMM.
*''SearchDB'': searching databases with the HMM.