biolocal:2009 october science - Revision history

Luca at 15:24, 16 October 2009

Luca — Fri, 16 Oct 2009 15:24:56 GMT

←Older revision		Revision as of 15:24, 16 October 2009
Line 17:		Line 17:
	* Done genome browser of Nonomuraea plasmids at http://www.ceinge.unina.it/~cozzuto/newVersion/nonomuraea/index2.html ('''Luca''').		* Done genome browser of Nonomuraea plasmids at http://www.ceinge.unina.it/~cozzuto/newVersion/nonomuraea/index2.html ('''Luca''').
	* Made genome pictures with [[http://stothard.afns.ualberta.ca/cgview_server/ cgview]] , KEGG and COG annotations by GRC on Nonomuraea plasmids.		* Made genome pictures with [[http://stothard.afns.ualberta.ca/cgview_server/ cgview]] , KEGG and COG annotations by GRC on Nonomuraea plasmids.
-	* ~~Installed~~ InterProScan ~~and~~ relative data ('''Mauro''').	+	* Started InterProScan installation with relative data ('''Mauro''').

	== [[14/10/2009]] ==		== [[14/10/2009]] ==
	* Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format ('''Luca''').		* Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format ('''Luca''').
		+
		+	== [[15/10/2009]] ==
		+	* Implemented in genomeannotator new functions: join different gene predictions, search duplicated and fragmented genes. PP1Y sequences were scanned for duplicated and fragmented genes. Added in Argo a new feature called MULTIPLE that is the union of all gene predictions ('''Luca''').
		+
		+	== [[16/10/2009]] ==
		+	* Implemented in genomeannotator a new function: find neighborhood genomes. PP1Y sequences were analyzed by using this feature. ('''Luca''')

Luca: /* 14/10/2009 */

Luca — Wed, 14 Oct 2009 10:21:53 GMT

14/10/2009

←Older revision		Revision as of 10:21, 14 October 2009
Line 20:		Line 20:

	== [[14/10/2009]] ==		== [[14/10/2009]] ==
-	* Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format (""Luca"").	+	* Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format ('''Luca''').

Luca at 10:21, 14 October 2009

Luca — Wed, 14 Oct 2009 10:21:28 GMT

←Older revision		Revision as of 10:21, 14 October 2009
Line 19:		Line 19:
	* Installed InterProScan and relative data ('''Mauro''').		* Installed InterProScan and relative data ('''Mauro''').

-	== [[13/10/2009]] ==	+	== [[14/10/2009]] ==
	* Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format (""Luca"").		* Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format (""Luca"").

Luca at 10:21, 14 October 2009

Luca — Wed, 14 Oct 2009 10:21:13 GMT

←Older revision		Revision as of 10:21, 14 October 2009
Line 18:		Line 18:
	* Made genome pictures with [[http://stothard.afns.ualberta.ca/cgview_server/ cgview]] , KEGG and COG annotations by GRC on Nonomuraea plasmids.		* Made genome pictures with [[http://stothard.afns.ualberta.ca/cgview_server/ cgview]] , KEGG and COG annotations by GRC on Nonomuraea plasmids.
	* Installed InterProScan and relative data ('''Mauro''').		* Installed InterProScan and relative data ('''Mauro''').
		+
		+	== [[13/10/2009]] ==
		+	* Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format (""Luca"").

Luca: /* 13/10/2009 */

Luca — Tue, 13 Oct 2009 12:04:22 GMT

13/10/2009

←Older revision		Revision as of 12:04, 13 October 2009
Line 16:		Line 16:
	== [[13/10/2009]] ==		== [[13/10/2009]] ==
	* Done genome browser of Nonomuraea plasmids at http://www.ceinge.unina.it/~cozzuto/newVersion/nonomuraea/index2.html ('''Luca''').		* Done genome browser of Nonomuraea plasmids at http://www.ceinge.unina.it/~cozzuto/newVersion/nonomuraea/index2.html ('''Luca''').
		+	* Made genome pictures with [[http://stothard.afns.ualberta.ca/cgview_server/ cgview]] , KEGG and COG annotations by GRC on Nonomuraea plasmids.
	* Installed InterProScan and relative data ('''Mauro''').		* Installed InterProScan and relative data ('''Mauro''').

Luca: /* 06/10/2009 */

Luca — Tue, 13 Oct 2009 10:15:52 GMT

06/10/2009

←Older revision		Revision as of 10:15, 13 October 2009
Line 1:		Line 1:
	== [[06/10/2009]] ==		== [[06/10/2009]] ==
-	* New Argo genome browser for PP1Y is installed ('''Luca'''). In this way all the functionality of Argo genome browser are available. The site is at #http://www.ceinge.unina.it/~cozzuto/newVersion/PP1Y/#	+	* New Argo genome browser for PP1Y is installed ('''Luca'''). In this way all the functionality of Argo genome browser are available. The site is at http://www.ceinge.unina.it/~cozzuto/newVersion/PP1Y/
	* Annotation of protein genes on nomomuraea plasmids ('''Luca'''). GRC tool was used with Uniref50 database.		* Annotation of protein genes on nomomuraea plasmids ('''Luca'''). GRC tool was used with Uniref50 database.

Luca: /* 06/10/2009 */

Luca — Tue, 13 Oct 2009 10:15:40 GMT

06/10/2009

←Older revision		Revision as of 10:15, 13 October 2009
Line 1:		Line 1:
	== [[06/10/2009]] ==		== [[06/10/2009]] ==
-	* New Argo genome browser for PP1Y is installed ('''Luca'''). In this way all the functionality of Argo genome browser are available. The site is at http://www.ceinge.unina.it/~cozzuto/newVersion/PP1Y/	+	* New Argo genome browser for PP1Y is installed ('''Luca'''). In this way all the functionality of Argo genome browser are available. The site is at #http://www.ceinge.unina.it/~cozzuto/newVersion/PP1Y/#
	* Annotation of protein genes on nomomuraea plasmids ('''Luca'''). GRC tool was used with Uniref50 database.		* Annotation of protein genes on nomomuraea plasmids ('''Luca'''). GRC tool was used with Uniref50 database.

Luca: /* 13/10/2009 */

Luca — Tue, 13 Oct 2009 10:13:27 GMT

13/10/2009

←Older revision		Revision as of 10:13, 13 October 2009
Line 15:		Line 15:

	== [[13/10/2009]] ==		== [[13/10/2009]] ==
-	* ~~Making~~ genome ~~images~~ of Nonomuraea ~~plasmid~~ ('''Luca''').	+	* Done genome browser of Nonomuraea plasmids at http://www.ceinge.unina.it/~cozzuto/newVersion/nonomuraea/index2.html ('''Luca''').
	* Installed InterProScan and relative data ('''Mauro''').		* Installed InterProScan and relative data ('''Mauro''').

Luca: /* 13/10/2009 */

Luca — Tue, 13 Oct 2009 10:09:54 GMT

13/10/2009

←Older revision		Revision as of 10:09, 13 October 2009
Line 15:		Line 15:

	== [[13/10/2009]] ==		== [[13/10/2009]] ==
-	* Making genome images of Nonomuraea plasmid ('''Luca & Mauro''').	+	* Making genome images of Nonomuraea plasmid ('''Luca''').
		+	* Installed InterProScan and relative data ('''Mauro''').

Luca at 10:08, 13 October 2009

Luca — Tue, 13 Oct 2009 10:08:10 GMT

←Older revision		Revision as of 10:08, 13 October 2009
Line 12:		Line 12:

	== [[12/10/2009]] ==		== [[12/10/2009]] ==
-	* Created a new website for share information of PP1Y genome to other people at http://www.ceinge.unina.it/~cozzuto/newVersion/index2.html ('''Luca'''). Created a list of genic pathways for each PP1Y replicon ('''Luca & Mauro'''). ~~Created~~	+	* Created a new website for share information of PP1Y genome to other people at http://www.ceinge.unina.it/~cozzuto/newVersion/index2.html ('''Luca'''). Created a list of genic pathways for each PP1Y replicon ('''Luca & Mauro''').
		+
		+	== [[13/10/2009]] ==
		+	* Making genome images of Nonomuraea plasmid ('''Luca & Mauro''').