Protein-related databases

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  • INTERPRO: Integrated Resource of Protein Domains and Functional Sites
  • IPRMATCHES: All hits to Swiss-Prot and TrEMBL entries in which the signatures are found by INTERPRO
  • PROSITE: A Dictionary of Protein Sites and Patterns - A. Bairoch
  • BLOCKS: The Blocks database of multiply aligned ungapped segments corresponding to the most highly conserved regions of proteins.
  • PRINTS: Protein Motif Fingerprint Database
  • PFAMA: The A division (human curated) division of the Pfam database. Alignments of protein domains and conserved regions.
  • PFAMB: The B division (automatically clustered) division of the Pfam database. Alignments of protein domains and conserved regions
  • SWISSPFAM: An annotated description of how Pfam domains map to (possibly multidomain) SwissProt entries.
  • PFAMHMM: PfamHmm database. Database of the Hidden Markov Models (HMMs) derived from the seed alignment in Pfam.
  • PFAMSEED: PfamSeed database. Seed alignments (hand edited) representing each domain
  • PRODOM: A comprehensive collection of protein domain families
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