SRS databases - Revision history

Giovanni at 22:59, 27 June 2007

2007-06-27T22:59:14Z

←Older revision		Revision as of 22:59, 27 June 2007
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	*[[Ontology databases]]		*[[Ontology databases]]
	*[[3D structures databases]]		*[[3D structures databases]]
-	*[[~~Methabolic~~ pathway databases]]	+	*[[Metabolic pathway databases]]
	*[[Reference databases]]		*[[Reference databases]]

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Leandra at 15:05, 26 June 2007

2007-06-26T15:05:37Z

←Older revision		Revision as of 15:05, 26 June 2007
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	Aboout 70 DBs are locally mantained and available at CEINGE. [[SRS]] is used as the main web interface for accessing to these biological databases.		Aboout 70 DBs are locally mantained and available at CEINGE. [[SRS]] is used as the main web interface for accessing to these biological databases.
-	An automatic procedure specifically developed takes care to mantain the databases up to date: every night public servers are checked ~~for the presence of new releases:~~ in case of new releases, the new file data are downloaded and automatically indexed.<br>	+	An automatic procedure, specifically developed, takes care to mantain the databases up to date: every night public servers are checked and, in case of new releases, the new file data are downloaded and automatically indexed.<br>
	Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of over 2 terabyte of HD space.		Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of over 2 terabyte of HD space.

-	The complete list of all the available databases on SRS is ~~available~~ [http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+databanks here].	+	The complete list of all the available databases on SRS is findable [http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+databanks here].

	===Available databases===		===Available databases===

Giovanni at 18:27, 25 June 2007

2007-06-25T18:27:10Z

←Older revision		Revision as of 18:27, 25 June 2007
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	Practically all the most used public databases are available, such as:		Practically all the most used public databases are available, such as:
	*[[DNA databases]]		*[[DNA databases]]
-
	*[[Protein databases]]		*[[Protein databases]]
	*[[Gene-related databases]]		*[[Gene-related databases]]
-
	*[[Protein-related databases]]		*[[Protein-related databases]]
	*[[Ontology databases]]		*[[Ontology databases]]
-
	*[[3D structures databases]]		*[[3D structures databases]]
-
	*[[Methabolic pathway databases]]		*[[Methabolic pathway databases]]
	*[[Reference databases]]		*[[Reference databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+TAXONOMY TAXONOMY]'': Contains names of all organisms represented in sequence databases by at least one nucleotide or protein sequence
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GENETICCODE GENETICCODE]'': NCBI database of genetic codes
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+OMIM OMIM]'': Online Mendelian Inheritance in Man database.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REBASE REBASE]'': Restriction Enzyme database.

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Giovanni at 18:26, 25 June 2007

2007-06-25T18:26:01Z

←Older revision		Revision as of 18:26, 25 June 2007
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	*[[Methabolic pathway databases]]		*[[Methabolic pathway databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PATHWAY PATHWAY]'': Kyoto Encyclopedia of Genes and Genomes (KEGG)
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+LENZYME LENZYME]'': Ligand Chemical Database for Enzyme Reactions
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+LCOMPOUND LCOMPOUND]'': Ligand Chemical Database for Enzyme Reactions
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+ENZYME ENZYME]'': Database of enzyme nomenclature
-
	*[[Reference databases]]		*[[Reference databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+TAXONOMY TAXONOMY]'': Contains names of all organisms represented in sequence databases by at least one nucleotide or protein sequence		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+TAXONOMY TAXONOMY]'': Contains names of all organisms represented in sequence databases by at least one nucleotide or protein sequence

Giovanni at 18:25, 25 June 2007

2007-06-25T18:25:20Z

←Older revision		Revision as of 18:25, 25 June 2007
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	*[[3D structures databases]]		*[[3D structures databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+NRL3D NRL3D]'': PIR-NRL3D Sequence-Structure Database.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PDB PDB]'': Protein Data Bank (PDB) - repository for the processing and distribution of 3-D biological macromolecular structure data
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PDBFINDER PDBFINDER]'': Directory for the Brookhaven Protein Data Bank. Constructed from the PDB, DSSP and HSSP databases

	*[[Methabolic pathway databases]]		*[[Methabolic pathway databases]]

Giovanni at 18:24, 25 June 2007

2007-06-25T18:24:49Z

←Older revision		Revision as of 18:24, 25 June 2007
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	*[[Protein-related databases]]		*[[Protein-related databases]]
	*[[Ontology databases]]		*[[Ontology databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GOA GOA]'': Gene Ontology Annotation of UniProtKb
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GO GO]'': GO - Geneontology Database

	*[[3D structures databases]]		*[[3D structures databases]]

Giovanni at 18:24, 25 June 2007

2007-06-25T18:24:02Z

←Older revision		Revision as of 18:24, 25 June 2007
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	*[[Protein-related databases]]		*[[Protein-related databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+INTERPRO INTERPRO]'': Integrated Resource of Protein Domains and Functional Sites
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+IPRMATCHES IPRMATCHES]'': All hits to Swiss-Prot and TrEMBL entries in which the signatures are found by INTERPRO
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PROSITE PROSITE]'': A Dictionary of Protein Sites and Patterns - A. Bairoch
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+BLOCKS BLOCKS]'': The Blocks database of multiply aligned ungapped segments corresponding to the most highly conserved regions of proteins.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PRINTS PRINTS]'': Protein Motif Fingerprint Database
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PFAMA PFAMA]'': The A division (human curated) division of the Pfam database. Alignments of protein domains and conserved regions.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PFAMB PFAMB]'': The B division (automatically clustered) division of the Pfam database. Alignments of protein domains and conserved regions
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+SWISSPFAM SWISSPFAM]'': An annotated description of how Pfam domains map to (possibly multidomain) SwissProt entries.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PFAMHMM PFAMHMM]'': PfamHmm database. Database of the Hidden Markov Models (HMMs) derived from the seed alignment in Pfam.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PFAMSEED PFAMSEED]'': PfamSeed database. Seed alignments (hand edited) representing each domain
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PRODOM PRODOM]'': A comprehensive collection of protein domain families
-
	*[[Ontology databases]]		*[[Ontology databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GOA GOA]'': Gene Ontology Annotation of UniProtKb		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GOA GOA]'': Gene Ontology Annotation of UniProtKb

Giovanni at 18:22, 25 June 2007

2007-06-25T18:22:53Z

←Older revision		Revision as of 18:22, 25 June 2007
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	*[[Protein databases]]		*[[Protein databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQP REFSEQP]'': Database of protein information from NCBI
-	''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIPROT UNIPROT]'': The UniProt Knowledgebase is the central database of protein sequences with accurate, consistent, ''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REMTREMBL REMTREMBL]'': REM-TrEMBL (REMaining TrEMBL) contains translations of EMBL nucleotide sequences that will not be included in TrEMBL
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIREF100 UNIREF100]'': Non redundant sequence database which combines identical sequences and sub-fragments from the same organism into a single UniRef entry
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIREF90 UNIREF90]'': A non-redundant sequence set, based on uniref100 with each sequence representing a cluster of sequence with at least 90% sequence identity
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIREF50 UNIREF50]'': A non-redundant sequence set, based on uniref100 with each sequence representing a cluster of sequences with at least 50% sequence identity
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+FANTOMp FANTOMp]'': Database of translations of mouse transcriptome
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+IMGTHLA IMGTHLA]'': The IMGT/HLA Database is part of the international ImMunoGeneTics IMGT project
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+IPI IPI]'': International Protein Index - a top level guide to main proteome databases
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQPNEW REFSEQPNEW]'': Database of protein information from REFSEQ RefSeq Protein Updates
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIPROT_SWISSPROT UNIPROT_SWISSPROT]'': The UniProt Knowledgebase is the central database of protein sequences with accurate, consistent, and rich sequence and functional annotation. UniProt/Swissprot contains manually-annotated records with information extracted from literature and curator-evaluated computational analysis
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIPROT_TREMBL UNIPROT_TREMBL]'': The UniProt Knowledgebase is the central database of protein sequences with accurate, consistent, and rich sequence and functional annotation. UniProt/Trembl consists of computationally analyzed records that await full manual annotation
-
	*[[Gene-related databases]]		*[[Gene-related databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+ENTREZGENE ENTREZGENE]'': NCBI's database for gene-specific information.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EPD EPD]'': Eukariotic Promoter Database - Philipp Bucher (1996)
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIGENE UNIGENE]'': Unique gene cluster db from the NCBI
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNISEQ UNISEQ]'': Sub-component of the UniGene db. Contains the sequence information from UniGene.
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UTRSITE UTRSITE]'': Sub-component of the UTRnr
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+HGBASE HGBASE]'': Human Genic Bi-Allelic Sequences Database
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+RHDB RHDB]'': The RHDB Radiation Hybrid Mapping Submissions database
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+RHEXP RHEXP]'': The RHDB Radiation Hybrid Mapping Experimental Conditions database
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+RHMAP RHMAP]'': The RHDB Radiation Hybrid Map Information database
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+RHPANEL RHPANEL]'': The RHPANEL RH Mapping panels database

	*[[Protein-related databases]]		*[[Protein-related databases]]

Giovanni at 18:19, 25 June 2007

2007-06-25T18:19:37Z

←Older revision		Revision as of 18:19, 25 June 2007
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	Practically all the most used public databases are available, such as:		Practically all the most used public databases are available, such as:
	*[[DNA databases]]		*[[DNA databases]]
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EMBL EMBL]'': The EMBL nucleotide sequence database including updates	+
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQ REFSEQ]'': Database providing non-redundant curated data representing knowledge of known genes	+
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+FANTOMn FANTOMn]'': Database of mouse transcriptome	+
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UTRnr UTRnr]'': 5-end and 3-end Untranslated Regions Database	+
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+IMGT IMGT]'': ImMunoGeneTics database. A database containing nucleotide sequences of immune system-related genes	+
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EMBLWGS EMBLWGS]'': The EMBL nucleotide sequence database - whole genome shotgun sequences	+
-	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQNEW REFSEQNEW]'': Database providing non-redundant curated data representing knowledge of known genes RefSeq Updates	+
	*[[Protein databases]]		*[[Protein databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQP REFSEQP]'': Database of protein information from NCBI		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQP REFSEQP]'': Database of protein information from NCBI

Giovanni at 18:19, 25 June 2007

2007-06-25T18:19:00Z

←Older revision		Revision as of 18:19, 25 June 2007
Line 7:		Line 7:
	===Available databases===		===Available databases===
	Practically all the most used public databases are available, such as:		Practically all the most used public databases are available, such as:
-	:*[[DNA databases]]	+	*[[DNA databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EMBL EMBL]'': The EMBL nucleotide sequence database including updates		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EMBL EMBL]'': The EMBL nucleotide sequence database including updates
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQ REFSEQ]'': Database providing non-redundant curated data representing knowledge of known genes		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQ REFSEQ]'': Database providing non-redundant curated data representing knowledge of known genes
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	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EMBLWGS EMBLWGS]'': The EMBL nucleotide sequence database - whole genome shotgun sequences		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EMBLWGS EMBLWGS]'': The EMBL nucleotide sequence database - whole genome shotgun sequences
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQNEW REFSEQNEW]'': Database providing non-redundant curated data representing knowledge of known genes RefSeq Updates		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQNEW REFSEQNEW]'': Database providing non-redundant curated data representing knowledge of known genes RefSeq Updates
-	:*[[Protein databases]]	+	*[[Protein databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQP REFSEQP]'': Database of protein information from NCBI		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REFSEQP REFSEQP]'': Database of protein information from NCBI
	''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIPROT UNIPROT]'': The UniProt Knowledgebase is the central database of protein sequences with accurate, consistent, ''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REMTREMBL REMTREMBL]'': REM-TrEMBL (REMaining TrEMBL) contains translations of EMBL nucleotide sequences that will not be included in TrEMBL		''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIPROT UNIPROT]'': The UniProt Knowledgebase is the central database of protein sequences with accurate, consistent, ''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REMTREMBL REMTREMBL]'': REM-TrEMBL (REMaining TrEMBL) contains translations of EMBL nucleotide sequences that will not be included in TrEMBL
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	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIPROT_TREMBL UNIPROT_TREMBL]'': The UniProt Knowledgebase is the central database of protein sequences with accurate, consistent, and rich sequence and functional annotation. UniProt/Trembl consists of computationally analyzed records that await full manual annotation		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+UNIPROT_TREMBL UNIPROT_TREMBL]'': The UniProt Knowledgebase is the central database of protein sequences with accurate, consistent, and rich sequence and functional annotation. UniProt/Trembl consists of computationally analyzed records that await full manual annotation

-	:*[[Gene-related databases]]	+	*[[Gene-related databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+ENTREZGENE ENTREZGENE]'': NCBI's database for gene-specific information.		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+ENTREZGENE ENTREZGENE]'': NCBI's database for gene-specific information.
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EPD EPD]'': Eukariotic Promoter Database - Philipp Bucher (1996)		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+EPD EPD]'': Eukariotic Promoter Database - Philipp Bucher (1996)
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	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+RHPANEL RHPANEL]'': The RHPANEL RH Mapping panels database		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+RHPANEL RHPANEL]'': The RHPANEL RH Mapping panels database

-	:*[[Protein-related databases]]	+	*[[Protein-related databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+INTERPRO INTERPRO]'': Integrated Resource of Protein Domains and Functional Sites		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+INTERPRO INTERPRO]'': Integrated Resource of Protein Domains and Functional Sites
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+IPRMATCHES IPRMATCHES]'': All hits to Swiss-Prot and TrEMBL entries in which the signatures are found by INTERPRO		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+IPRMATCHES IPRMATCHES]'': All hits to Swiss-Prot and TrEMBL entries in which the signatures are found by INTERPRO
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	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PRODOM PRODOM]'': A comprehensive collection of protein domain families		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PRODOM PRODOM]'': A comprehensive collection of protein domain families

-	:*[[Ontology databases]]	+	*[[Ontology databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GOA GOA]'': Gene Ontology Annotation of UniProtKb		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GOA GOA]'': Gene Ontology Annotation of UniProtKb
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GO GO]'': GO - Geneontology Database		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GO GO]'': GO - Geneontology Database
-	*~~'''~~3D structures databases~~''':~~	+
		+	*[[3D structures databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+NRL3D NRL3D]'': PIR-NRL3D Sequence-Structure Database.		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+NRL3D NRL3D]'': PIR-NRL3D Sequence-Structure Database.
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PDB PDB]'': Protein Data Bank (PDB) - repository for the processing and distribution of 3-D biological macromolecular structure data		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PDB PDB]'': Protein Data Bank (PDB) - repository for the processing and distribution of 3-D biological macromolecular structure data
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PDBFINDER PDBFINDER]'': Directory for the Brookhaven Protein Data Bank. Constructed from the PDB, DSSP and HSSP databases		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PDBFINDER PDBFINDER]'': Directory for the Brookhaven Protein Data Bank. Constructed from the PDB, DSSP and HSSP databases
-	*~~'''~~Methabolic pathway databases~~''':~~	+
		+	*[[Methabolic pathway databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PATHWAY PATHWAY]'': Kyoto Encyclopedia of Genes and Genomes (KEGG)		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+PATHWAY PATHWAY]'': Kyoto Encyclopedia of Genes and Genomes (KEGG)
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+LENZYME LENZYME]'': Ligand Chemical Database for Enzyme Reactions		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+LENZYME LENZYME]'': Ligand Chemical Database for Enzyme Reactions
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+LCOMPOUND LCOMPOUND]'': Ligand Chemical Database for Enzyme Reactions		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+LCOMPOUND LCOMPOUND]'': Ligand Chemical Database for Enzyme Reactions
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+ENZYME ENZYME]'': Database of enzyme nomenclature		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+ENZYME ENZYME]'': Database of enzyme nomenclature
-	*~~'''~~Reference databases~~''':~~	+
		+	*[[Reference databases]]
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+TAXONOMY TAXONOMY]'': Contains names of all organisms represented in sequence databases by at least one nucleotide or protein sequence		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+TAXONOMY TAXONOMY]'': Contains names of all organisms represented in sequence databases by at least one nucleotide or protein sequence
	**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GENETICCODE GENETICCODE]'': NCBI database of genetic codes		**''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GENETICCODE GENETICCODE]'': NCBI database of genetic codes