Capri Alignment page - Revision history

Luca at 09:37, 21 June 2007

Luca — Thu, 21 Jun 2007 09:37:26 GMT

←Older revision		Revision as of 09:37, 21 June 2007
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	Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clicking [http://bioinfo.ceinge.unina.it/tools/winterf/sreformat.php here].		Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clicking [http://bioinfo.ceinge.unina.it/tools/winterf/sreformat.php here].
-		+	[[Image:Capri_alignment_page.gif\|right]]
	===Display===		===Display===
	Display menu allows to display sequence alignment features		Display menu allows to display sequence alignment features

Luca at 20:57, 20 June 2007

Luca — Wed, 20 Jun 2007 20:57:49 GMT

←Older revision		Revision as of 20:57, 20 June 2007
Line 3:		Line 3:
	===Display===		===Display===
	Display menu allows to display sequence alignment features		Display menu allows to display sequence alignment features
-	:* Summary: ~~display~~ a sequence with ~~selected features~~	+	:* Summary: give information on a multiple sequence alignments
-		+	:* Pretty: graphical display of aligned sequences with colouring and boxing
		+	:* Identities: display identical residues
		+	:* Similarities: display similar residues
		+	:* Dissimilarities: display dissimilar residues
		+	:* Non identities: display non identical residues

	===Analyze===		===Analyze===
-	Analyze menu allows to compute different sequence ~~values~~	+	Analyze menu allows to compute different feature of sequence aligments
-		+	:* Consensus: compute the sequece consensus
-		+	:* Conservation: plot quality of conservation of a sequence alignment in a graphical mode
-	~~;Frequently used functions divided by menu~~:	+	:* Distance matrix: display a distance matrix
-	*~~''Display''~~: ~~showing colored aligned sequences, identities and similarities.~~	+	:* Gapped matrix: display gapped matrix
-	*~~''Analyze''~~: ~~analyzing consensus, distance~~ matrix ~~and computing an~~ HMM.	+	:* Frequency matrix: display frequency matrix
		+	:* HMM: build an Hidden Markov Model.

Luca at 17:39, 20 June 2007

Luca — Wed, 20 Jun 2007 17:39:56 GMT

←Older revision		Revision as of 17:39, 20 June 2007
Line 1:		Line 1:
	Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clicking [http://bioinfo.ceinge.unina.it/tools/winterf/sreformat.php here].		Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clicking [http://bioinfo.ceinge.unina.it/tools/winterf/sreformat.php here].
		+
		+	===Display===
		+	Display menu allows to display sequence alignment features
		+	:* Summary: display a sequence with selected features
		+
		+
		+	===Analyze===
		+	Analyze menu allows to compute different sequence values
		+

	;Frequently used functions divided by menu:		;Frequently used functions divided by menu:
	*''Display'': showing colored aligned sequences, identities and similarities.		*''Display'': showing colored aligned sequences, identities and similarities.
	*''Analyze'': analyzing consensus, distance matrix and computing an HMM.		*''Analyze'': analyzing consensus, distance matrix and computing an HMM.

Luca: New page: Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clic...

Luca — Wed, 20 Jun 2007 11:20:30 GMT

New page: Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clic...

New page

Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clicking [http://bioinfo.ceinge.unina.it/tools/winterf/sreformat.php here].

;Frequently used functions divided by menu:
*''Display'': showing colored aligned sequences, identities and similarities.
*''Analyze'': analyzing consensus, distance matrix and computing an HMM.