BLAST
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(New page: ==BLAST== BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs. At CEINGE the NCBI BLAST is installed. The NCBI BLAST family of programs includes: {| border=...)
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Revision as of 13:42, 11 June 2007
BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs.
At CEINGE the NCBI BLAST is installed. The NCBI BLAST family of programs includes:
| Program | description | blastp | compares an amino acid query sequence against a protein sequence database | blastn | compares a nucleotide query sequence against a nucleotide sequence database | blastx | compares a nucleotide query sequence translated in all reading frames against a protein sequence database | tblastn | compares a protein query sequence against a nucleotide sequence database dynamically translated in all reading frames | tblastx | compares the six-frame translations of a nucleotide query sequence against the six-frame translations of a nucleotide sequence database. |
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