Capri Alignment page
From Wiki CEINGE
Alignment Page make available the analysis of nucleic or proteic sequence alignments. The only supported format is the MSF. It is possible to convert other alignment formats in MSF by clicking here.
Display
Display menu allows to display sequence alignment features
- Summary: give information on a multiple sequence alignments
- Pretty: graphical display of aligned sequences with colouring and boxing
- Identities: display identical residues
- Similarities: display similar residues
- Dissimilarities: display dissimilar residues
- Non identities: display non identical residues
Analyze
Analyze menu allows to compute different feature of sequence aligments
- Consensus: compute the sequece consensus
- Conservation: plot quality of conservation of a sequence alignment in a graphical mode
- Distance matrix: display a distance matrix
- Gapped matrix: display gapped matrix
- Frequency matrix: display frequency matrix
- HMM: build an Hidden Markov Model.