Capri DNA page

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	DNA page is the CAPRI default page that allows to analyze nucleic acid sequences like DNA or RNA. User can edit, translate or align its sequences or search within the installed databases. Top menu bar changes if one, two or more sequences are inserted and analyzed at the same time, indicating which tools are available for the analysis.		DNA page is the CAPRI default page that allows to analyze nucleic acid sequences like DNA or RNA. User can edit, translate or align its sequences or search within the installed databases. Top menu bar changes if one, two or more sequences are inserted and analyzed at the same time, indicating which tools are available for the analysis.
-	;Functions in single sequence analysis.	+	;Functions in single sequence analysis
-	*''Analyze'': computing of GC content and temperature melting	+	''Edit:'' allows to manipulate a sequence or to display some informations
		+	:* Show: display a sequence with features, translation and other informations.
		+	:* reformatting
		+
		+	''Analyze:'' computing of
		+	:* GC content
		+	:* temperature melting
	*''Process'': making the complement and the translation in protein		*''Process'': making the complement and the translation in protein
	*''Search'': finding restriction enzyme (RE) sites, patterns, open reading frames (ORFs), PCR primers and siRNAs		*''Search'': finding restriction enzyme (RE) sites, patterns, open reading frames (ORFs), PCR primers and siRNAs

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Revision as of 13:49, 20 June 2007

DNA page is the CAPRI default page that allows to analyze nucleic acid sequences like DNA or RNA. User can edit, translate or align its sequences or search within the installed databases. Top menu bar changes if one, two or more sequences are inserted and analyzed at the same time, indicating which tools are available for the analysis.

Functions in single sequence analysis

Edit: allows to manipulate a sequence or to display some informations

• Show: display a sequence with features, translation and other informations.
• reformatting

Analyze: computing of

• GC content
• temperature melting

• Process: making the complement and the translation in protein
• Search: finding restriction enzyme (RE) sites, patterns, open reading frames (ORFs), PCR primers and siRNAs
• Extract: extracting a sequence fragment with the given coordinates
• SearchDB: searching in sequence databases.

Functions in multi sequence analysis.

• Draw: drawing a dot-plot, which shows sequence similarity between sequences
• Search: searching matches by profile
• Align: aligning sequences with the most popular tools (ClustalW, matcher, strecher).