Capri Protein page
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| Protein Page allows the analysis of proteic sequences. User can edit, back-translate or align its sequences or search within the installed databases. Top menu bar changes if one, two or more sequences are inserted and analyzed at the same time, indicating which tools are available for the analysis. | Protein Page allows the analysis of proteic sequences. User can edit, back-translate or align its sequences or search within the installed databases. Top menu bar changes if one, two or more sequences are inserted and analyzed at the same time, indicating which tools are available for the analysis. | ||
| - | ;Functions in single sequence analysis | + | ;Functions in single sequence analysis. |
| *''Analyze'': analysis of proteolytic enzyme or reagent cleavage digest, of charge, isoelectric point and secondary structure | *''Analyze'': analysis of proteolytic enzyme or reagent cleavage digest, of charge, isoelectric point and secondary structure | ||
| *''Process'': making the back-translation and the shuffling | *''Process'': making the back-translation and the shuffling | ||
| Line 7: | Line 7: | ||
| *''Extract'': extracting a sequence fragment with the given coordinates | *''Extract'': extracting a sequence fragment with the given coordinates | ||
| *''SearchDB'': searching in sequence databases. | *''SearchDB'': searching in sequence databases. | ||
| - | ;Functions in multi sequence analysis | + | |
| + | ;Functions in multi sequence analysis. | ||
| *''Draw'': drawing a dot-plot, which shows sequence similarity between sequences | *''Draw'': drawing a dot-plot, which shows sequence similarity between sequences | ||
| *''Search'': searching matches by profile | *''Search'': searching matches by profile | ||
| *''SearchDB'': searching in sequence databases. | *''SearchDB'': searching in sequence databases. | ||
| *''Align'': aligning sequences with the most popular tools (ClustalW, matcher, strecher) or to an HMM profile. | *''Align'': aligning sequences with the most popular tools (ClustalW, matcher, strecher) or to an HMM profile. | ||
Revision as of 13:22, 20 June 2007
Protein Page allows the analysis of proteic sequences. User can edit, back-translate or align its sequences or search within the installed databases. Top menu bar changes if one, two or more sequences are inserted and analyzed at the same time, indicating which tools are available for the analysis.
- Functions in single sequence analysis.
- Analyze: analysis of proteolytic enzyme or reagent cleavage digest, of charge, isoelectric point and secondary structure
- Process: making the back-translation and the shuffling
- Search: searching pattern, coiled coil, transmembrane tract, cleavage and antigenic sites.
- Extract: extracting a sequence fragment with the given coordinates
- SearchDB: searching in sequence databases.
- Functions in multi sequence analysis.
- Draw: drawing a dot-plot, which shows sequence similarity between sequences
- Search: searching matches by profile
- SearchDB: searching in sequence databases.
- Align: aligning sequences with the most popular tools (ClustalW, matcher, strecher) or to an HMM profile.
