EMBOSS
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- | ==EMBOSS | + | ==EMBOSS == |
- | + | EMBOSS (European Molecular Biology Open Software Suite) is a free Open Source software analysis package specially developed for the needs of the molecular biology user community. The software automatically copes with data in a variety of formats and allows other scientists to develop and release software in true open source spirit. It also integrates many available packages and tools for sequence analysis into a seamless whole. Hundreds of programs (applications) are included within EMBOSSS, covering areas such as | |
- | + | *Sequence alignment, | |
- | + | *Rapid database searching with sequence patterns, | |
- | + | *Protein motif identification and domain analysis | |
- | + | *Nucleotide sequence pattern analysis | |
- | + | *Presentation tools for publication, | |
- | + | and much more. | |
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- | + | Among them, some applications are considered very popular, such as: | |
- | + | *'''infoseq''': Displays some simple information about sequences. | |
- | + | *'''water''': Smith-Waterman local alignment. | |
- | + | *'''pepstats''': Protein statistics. | |
- | + | *'''showfeat''': Show features of a sequence. | |
- | + | *'''palindrome''': looks for inverted repeats in a nucleotide sequence. | |
- | + | *'''eprimer3''': Picks PCR primers and hybridization oligos. | |
- | + | *'''extractseq''': Extract regions from a sequence. | |
- | + | *'''tfscan''': Scans DNA sequences for transcription factors. | |
- | + | *'''patmatmotifs''': Compares a protein sequence to the PROSITE motif database. | |
- | + | *'''abiview''': Reads ABI file and display the trace. | |
- | + | *'''tranalign''': Align nucleic coding regions given the aligned proteins. | |
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Revision as of 11:37, 11 June 2007
EMBOSS
EMBOSS (European Molecular Biology Open Software Suite) is a free Open Source software analysis package specially developed for the needs of the molecular biology user community. The software automatically copes with data in a variety of formats and allows other scientists to develop and release software in true open source spirit. It also integrates many available packages and tools for sequence analysis into a seamless whole. Hundreds of programs (applications) are included within EMBOSSS, covering areas such as
- Sequence alignment,
- Rapid database searching with sequence patterns,
- Protein motif identification and domain analysis
- Nucleotide sequence pattern analysis
- Presentation tools for publication,
and much more.
Among them, some applications are considered very popular, such as:
- infoseq: Displays some simple information about sequences.
- water: Smith-Waterman local alignment.
- pepstats: Protein statistics.
- showfeat: Show features of a sequence.
- palindrome: looks for inverted repeats in a nucleotide sequence.
- eprimer3: Picks PCR primers and hybridization oligos.
- extractseq: Extract regions from a sequence.
- tfscan: Scans DNA sequences for transcription factors.
- patmatmotifs: Compares a protein sequence to the PROSITE motif database.
- abiview: Reads ABI file and display the trace.
- tranalign: Align nucleic coding regions given the aligned proteins.