EMBOSS
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Revision as of 19:07, 1 June 2007
EMBOSS Application Groups
- Acd
- Acd file utilities
- Alignment consensus
- Merging sequences to make a consensus
- Alignment differences
- Finding differences between sequences
- Alignment dot plots
- Dot plot sequence comparisons
- Alignment global
- Global sequence alignment
- Alignment local
- Local sequence alignment
- Alignment multiple
- Multiple sequence alignment
- Display
- Publication-quality display
- Edit
- Sequence editing
- Enzyme kinetics
- Enzyme kinetics calculations
- Feature tables
- Manipulation and display of sequence annotation
- HMM
- Hidden markov model analysis
- Information
- Information and general help for users
- Menus
- Menu interface(s)
- Nucleic 2d structure
- Nucleic acid secondary structure
- Nucleic codon usage
- Codon usage analysis
- Nucleic composition
- Composition of nucleotide sequences
- Nucleic CpG islands
- CpG island detection and analysis
- Nucleic gene finding
- Predictions of genes and other genomic features
- Nucleic motifs
- Nucleic acid motif searches
- Nucleic mutation
- Nucleic acid sequence mutation
- Nucleic primers
- Primer prediction
- Nucleic profiles
- Nucleic acid profile generation and searching
- Nucleic repeats
- Nucleic acid repeat detection
- Nucleic restriction
- Restriction enzyme sites in nucleotide sequences
- Nucleic RNA folding
- RNA folding methods and analysis
- Nucleic transcription
- Transcription factors, promoters and terminator prediction
- Nucleic translation
- Translation of nucleotide sequence to protein sequence
- Phylogeny consensus
- Phylogenetic consensus methods
- Phylogeny continuous characters
- Phylogenetic continuous character methods
- Phylogeny discrete characters
- Phylogenetic discrete character methods
- Phylogeny distance matrix
- Phylogenetic distance matrix methods
- Phylogeny gene frequencies
- Phylogenetic gene frequency methods
- Phylogeny molecular sequence
- Phylogenetic tree drawing methods
- Phylogeny tree drawing
- Phylogenetic molecular sequence methods
- Protein 2d structure
- Protein secondary structure
- Protein 3d structure
- Protein tertiary structure
- Protein composition
- Composition of protein sequences
- Protein motifs
- Protein motif searches
- Protein mutation
- Protein sequence mutation
- Protein profiles
- Protein profile generation and searching
- Test
- Testing tools, not for general use.
- Utils database creation
- Database installation
- Utils database indexing
- Database indexing
