Protein-related databases
From Wiki CEINGE
- INTERPRO: Integrated Resource of Protein Domains and Functional Sites
- IPRMATCHES: All hits to Swiss-Prot and TrEMBL entries in which the signatures are found by INTERPRO
- PROSITE: A Dictionary of Protein Sites and Patterns - A. Bairoch
- BLOCKS: The Blocks database of multiply aligned ungapped segments corresponding to the most highly conserved regions of proteins.
- PRINTS: Protein Motif Fingerprint Database
- PFAMA: The A division (human curated) division of the Pfam database. Alignments of protein domains and conserved regions.
- PFAMB: The B division (automatically clustered) division of the Pfam database. Alignments of protein domains and conserved regions
- SWISSPFAM: An annotated description of how Pfam domains map to (possibly multidomain) SwissProt entries.
- PFAMHMM: PfamHmm database. Database of the Hidden Markov Models (HMMs) derived from the seed alignment in Pfam.
- PFAMSEED: PfamSeed database. Seed alignments (hand edited) representing each domain
- PRODOM: A comprehensive collection of protein domain families