biolocal:2009 october science
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| == [[07/10/2009]] == | == [[07/10/2009]] == | ||
| * Annotation of COG genes on PP1Y genome ('''Luca'''). GRC tool was used with COG database to annotate PPY replicons. A php script in was created in '''/biodev/.project/tools/''' folder named '''addCog2tbl.php''' to add COG annotation to the tbl file and to produce statistics on COG classes. | * Annotation of COG genes on PP1Y genome ('''Luca'''). GRC tool was used with COG database to annotate PPY replicons. A php script in was created in '''/biodev/.project/tools/''' folder named '''addCog2tbl.php''' to add COG annotation to the tbl file and to produce statistics on COG classes. | ||
| - | * Analysis of fragmented ORFs on PP1Y genome ('''Luca'''). Results suggest that some frame shift may be occurred during sequencing. | + | * Analysis of fragmented ORFs on PP1Y genome ('''Luca'''). ''Results suggest that some frame shift may be occurred during sequencing''. |
| == [[08/10/2009]] == | == [[08/10/2009]] == | ||
| * Added COG annotations and initial contigs to the Argo browser on PP1Y genome ('''Luca'''). | * Added COG annotations and initial contigs to the Argo browser on PP1Y genome ('''Luca'''). | ||
| * Making GRC annotations with KEGG database on PP1Y genome ('''Luca'''). | * Making GRC annotations with KEGG database on PP1Y genome ('''Luca'''). | ||
| + | |||
| + | == [[12/10/2009]] == | ||
| + | * Created a new website for share information of PP1Y genome to other people at http://www.ceinge.unina.it/~cozzuto/newVersion/index2.html ('''Luca'''). Created a list of genic pathways for each PP1Y replicon ('''Luca & Mauro'''). Created | ||
Revision as of 11:53, 13 October 2009
Contents |
06/10/2009
- New Argo genome browser for PP1Y is installed (Luca). In this way all the functionality of Argo genome browser are available. The site is at http://www.ceinge.unina.it/~cozzuto/newVersion/PP1Y/
- Annotation of protein genes on nomomuraea plasmids (Luca). GRC tool was used with Uniref50 database.
07/10/2009
- Annotation of COG genes on PP1Y genome (Luca). GRC tool was used with COG database to annotate PPY replicons. A php script in was created in /biodev/.project/tools/ folder named addCog2tbl.php to add COG annotation to the tbl file and to produce statistics on COG classes.
- Analysis of fragmented ORFs on PP1Y genome (Luca). Results suggest that some frame shift may be occurred during sequencing.
08/10/2009
- Added COG annotations and initial contigs to the Argo browser on PP1Y genome (Luca).
- Making GRC annotations with KEGG database on PP1Y genome (Luca).
12/10/2009
- Created a new website for share information of PP1Y genome to other people at http://www.ceinge.unina.it/~cozzuto/newVersion/index2.html (Luca). Created a list of genic pathways for each PP1Y replicon (Luca & Mauro). Created
