biolocal:2009 october science
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| * Installed InterProScan and relative data ('''Mauro'''). | * Installed InterProScan and relative data ('''Mauro'''). | ||
| - | == [[ | + | == [[14/10/2009]] == |
| * Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format (""Luca""). | * Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format (""Luca""). | ||
Revision as of 12:21, 14 October 2009
Contents |
06/10/2009
- New Argo genome browser for PP1Y is installed (Luca). In this way all the functionality of Argo genome browser are available. The site is at http://www.ceinge.unina.it/~cozzuto/newVersion/PP1Y/
- Annotation of protein genes on nomomuraea plasmids (Luca). GRC tool was used with Uniref50 database.
07/10/2009
- Annotation of COG genes on PP1Y genome (Luca). GRC tool was used with COG database to annotate PPY replicons. A php script in was created in /biodev/.project/tools/ folder named addCog2tbl.php to add COG annotation to the tbl file and to produce statistics on COG classes.
- Analysis of fragmented ORFs on PP1Y genome (Luca). Results suggest that some frame shift may be occurred during sequencing.
08/10/2009
- Added COG annotations and initial contigs to the Argo browser on PP1Y genome (Luca).
- Making GRC annotations with KEGG database on PP1Y genome (Luca).
12/10/2009
- Created a new website for share information of PP1Y genome to other people at http://www.ceinge.unina.it/~cozzuto/newVersion/index2.html (Luca). Created a list of genic pathways for each PP1Y replicon (Luca & Mauro).
13/10/2009
- Done genome browser of Nonomuraea plasmids at http://www.ceinge.unina.it/~cozzuto/newVersion/nonomuraea/index2.html (Luca).
- Made genome pictures with [cgview] , KEGG and COG annotations by GRC on Nonomuraea plasmids.
- Installed InterProScan and relative data (Mauro).
14/10/2009
- Started new project called genomeannotator that includes all the scripts previously created to convert annotation results to a gff3 format (""Luca"").
