biolocal:2009 october science

From Wiki CEINGE

Contents 1 06/10/2009 2 07/10/2009 3 08/10/2009 4 12/10/2009 5 13/10/2009

06/10/2009

• New Argo genome browser for PP1Y is installed (Luca). In this way all the functionality of Argo genome browser are available. The site is at #http://www.ceinge.unina.it/~cozzuto/newVersion/PP1Y/#
• Annotation of protein genes on nomomuraea plasmids (Luca). GRC tool was used with Uniref50 database.

07/10/2009

• Annotation of COG genes on PP1Y genome (Luca). GRC tool was used with COG database to annotate PPY replicons. A php script in was created in /biodev/.project/tools/ folder named addCog2tbl.php to add COG annotation to the tbl file and to produce statistics on COG classes.
• Analysis of fragmented ORFs on PP1Y genome (Luca). Results suggest that some frame shift may be occurred during sequencing.

08/10/2009

• Added COG annotations and initial contigs to the Argo browser on PP1Y genome (Luca).
• Making GRC annotations with KEGG database on PP1Y genome (Luca).

12/10/2009

• Created a new website for share information of PP1Y genome to other people at http://www.ceinge.unina.it/~cozzuto/newVersion/index2.html (Luca). Created a list of genic pathways for each PP1Y replicon (Luca & Mauro).

13/10/2009

• Done genome browser of Nonomuraea plasmids at http://www.ceinge.unina.it/~cozzuto/newVersion/nonomuraea/index2.html (Luca).
• Installed InterProScan and relative data (Mauro).