Capri HMM page

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HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.

[edit] Align

Align menu allows to align sequences to a given HMM.

  • Sequences

[edit] Extract

Extract menu allows to extract features from a HMM.

  • Sequences: compute a number of sequences compatible with a given HMM.
  • Consensus: calculate the consensus of the HMM.

[edit] SearchDB

SearchDB menu allows to search in sequence databases which are currently installed at CEINGE. It is possible to search by using:

  • HMMsearch
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