biolocal:BioinfoActivity

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 +== Chronological maintenance report ==
 +[[biolocal:maintenanceReport|Maintenance report]] : Report of changes to network, server configuration and others.
 +
== Network == == Network ==
-[[bioinfolocal:ed4VpnFromCeinge|VPN connectivity to the Ed4 private network]] : The network schema showing the connectivity from the ceinge labs to the ed4 private network, through the vpn connection.+[[biolocal:ed4VpnFromCeinge|VPN connectivity to the Ed4 private network]] : The network schema showing the connectivity from the ceinge labs to the ed4 private network, through the vpn connection.
It allows the Diamante software to run on a private internal network distributed on different sites. It allows the Diamante software to run on a private internal network distributed on different sites.
 +
 +[[biolocal:wirelessForGuests|Guest access to wireless network]] : Service to assign temporary access account for wireless network.
 +
 +[[biolocal:DNS|Domain Name System]] : Distribution of DNS servers.
== Servers == == Servers ==
-[[bioinfolocal:biotmp policy|Biotmp file removing policy]] : Management of the files written in the biotmp cluster directory, exported by the pc-tera (143.225.151.53).+[[biolocal:biotmp policy|Biotmp file removing policy]] : Management of the files written in the biotmp cluster directory, exported by the pc-tera (143.225.151.53).
-[[bioinfolocal:FShomesRecover|Recover the file server data]] : In case of corruption of the disks hosting the homes of the file server, a procedure of data recovering should be applied.+[[biolocal:FShomesRecover|Recover the file server data]] : In case of corruption of the disks hosting the homes of the file server, a procedure of data recovering should be applied.
 + 
 +[[biolocal:ClusterMounts|Cluster mount points]] : Volumes mounted on cluster's nodes
 + 
 +[[biolocal:nagios|Nagios monitoring system]] : Configuration description of the Nagios monitoring server
 + 
 +== Clustering and grid ==
 +[[biolocal:nodedisk|Cluster node disk]] : Partitioning and initialization of a cluster node disk
 + 
 +[[biolocal:jobsub|Glite job submission]] : job submission on the grid based on glite
 + 
 +[[biolocal:certdeleg|Certificate extension]] : how to extend a certificate duration by using delegtion
 + 
 +[[biolocal:Robot on UI|Robot certificate on UI]] : Use of the robot certificate on the UI server
 + 
 +== Storage ==
 +[[biolocal:storagenet|Central storage networking]] : Architecture of the storage distribution on the FC and iSCSI network.
 + 
 +[[biolocal:storagePartitions|Central storage partitioning]] : Partitions on the central storage and their association to the accessing servers.
== Howto == == Howto ==
-[[bioinfolocal:open firewall for proftpd|Configure the firewall for proftpd]] : The ftp server (proftpd) uses a port to establish a connection (port 21) and a number of ports to allow the transfer of the data; all that ports must be opened on the firewall.+[[biolocal:open firewall for proftpd|Configure the firewall for proftpd]] : The ftp server (proftpd) uses a port to establish a connection (port 21) and a number of ports to allow the transfer of the data; all that ports must be opened on the firewall.
-[[bioinfolocal:bigsis agent install| Install and run the bigsister agent]] : A quick guide to the installation of the bigsister agent and its configuration for status notification to the bigsister server.+[[biolocal:bigsis agent install| Install and run the bigsister agent]] : A quick guide to the installation of the bigsister agent and its configuration for status notification to the bigsister server.
 + 
 +[[biolocal:Write_the_script_documentation|Write the script documentation]] : How to write and read the script documentation.
 + 
 +[[biolocal:wiki_client|Wiki client usage]] : Make wiki code with a command line tool
 + 
 +[[biolocal:veil|Veil postgres plugin]] : Compile and install the Veil postgres plugin
 + 
 +[[biolocal:linux raid|Linux RAID]] : Managing linux raid disks
 + 
 +[[biolocal:diskless|Diskless management]] : Create and manage diskless OSes
 +*[[biolocal:HDdiskless|HD for diskless]] : Local HD partitioning for diskless OSes
== Software installations == == Software installations ==
-[[bioinfolocal:httpdOnCluster|Configure and compile httpd on cluster]] : Configure the httpd sources to make a customized installation on the cluster.+[[biolocal:httpdOnCluster|Configure and compile httpd on cluster]] : Configure the httpd sources to make a customized installation on the cluster.
-[[bioinfolocal:MailServerInstall|MailServer software installation]] : A short list of programs used to build a mail server.+[[biolocal:MailServerInstall|MailServer software installation]] : A short list of programs used to build a mail server.
 + 
 +[[biolocal:Start_new_project|Start a new project]] : How to start a new bioinformatical research project.
== Group services == == Group services ==
-[[bioinfolocal:bioinfogroupMng|Bioinfo group server access]] : Bioinfo userid assignement and server access facilities.+[[biolocal:bioinfogroupMng|Bioinfo group server access]] : Bioinfo userid assignement and server access facilities.
 + 
 +[[biolocal:gridUse|Access to the grid]] : A small guide to set the access to the grid using the personal certificates.
 + 
 +[[biolocal:sharedPrograms|Bioinfo shared programs]] : Organization of bioinformatic shared programs.
 + 
 +[[biolocal:executingOnCluster|Execution of bioinfo programs on cluster]]: Organization of files to launch a bioinfo programs on cluster
 + 
 +== Tips and Tricks ==
 +[[biolocal:shellFileEditing|Automate manipulation of text in file]] : Some bash commands to manipulate text in files in "non interctive" way.
-[[bioinfolocal:gridUse|Access to the grid]] : A small guide to set the access to the grid using the personal certificates.+== Research activity report ==
 +[[biolocal:researchReport|Research activity report]] : Report of all research activities.

Current revision

Contents

[hide]

[edit] Chronological maintenance report

Maintenance report : Report of changes to network, server configuration and others.

[edit] Network

VPN connectivity to the Ed4 private network : The network schema showing the connectivity from the ceinge labs to the ed4 private network, through the vpn connection. It allows the Diamante software to run on a private internal network distributed on different sites.

Guest access to wireless network : Service to assign temporary access account for wireless network.

Domain Name System : Distribution of DNS servers.

[edit] Servers

Biotmp file removing policy : Management of the files written in the biotmp cluster directory, exported by the pc-tera (143.225.151.53).

Recover the file server data : In case of corruption of the disks hosting the homes of the file server, a procedure of data recovering should be applied.

Cluster mount points : Volumes mounted on cluster's nodes

Nagios monitoring system : Configuration description of the Nagios monitoring server

[edit] Clustering and grid

Cluster node disk : Partitioning and initialization of a cluster node disk

Glite job submission : job submission on the grid based on glite

Certificate extension : how to extend a certificate duration by using delegtion

Robot certificate on UI : Use of the robot certificate on the UI server

[edit] Storage

Central storage networking : Architecture of the storage distribution on the FC and iSCSI network.

Central storage partitioning : Partitions on the central storage and their association to the accessing servers.

[edit] Howto

Configure the firewall for proftpd : The ftp server (proftpd) uses a port to establish a connection (port 21) and a number of ports to allow the transfer of the data; all that ports must be opened on the firewall.

Install and run the bigsister agent : A quick guide to the installation of the bigsister agent and its configuration for status notification to the bigsister server.

Write the script documentation : How to write and read the script documentation.

Wiki client usage : Make wiki code with a command line tool

Veil postgres plugin : Compile and install the Veil postgres plugin

Linux RAID : Managing linux raid disks

Diskless management : Create and manage diskless OSes

[edit] Software installations

Configure and compile httpd on cluster : Configure the httpd sources to make a customized installation on the cluster.

MailServer software installation : A short list of programs used to build a mail server.

Start a new project : How to start a new bioinformatical research project.

[edit] Group services

Bioinfo group server access : Bioinfo userid assignement and server access facilities.

Access to the grid : A small guide to set the access to the grid using the personal certificates.

Bioinfo shared programs : Organization of bioinformatic shared programs.

Execution of bioinfo programs on cluster: Organization of files to launch a bioinfo programs on cluster

[edit] Tips and Tricks

Automate manipulation of text in file : Some bash commands to manipulate text in files in "non interctive" way.

[edit] Research activity report

Research activity report : Report of all research activities.

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