Capri HMM page

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(New page: HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from th...)
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HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file. HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.
-;Frequently used functions.+===Align===
-*''Aling'': aligning sequences to the HMM. +Align menu allows to align sequences to a given HMM.
-*''Extract'': extracting consensus or a number of sequences in agreement with the HMM. +:* Sequences
-*''SearchDB'': searching databases with the HMM.+ 
 +===Extract===
 +Extract menu allows to extract features from a HMM.
 +:* Sequences: compute a number of sequences compatible with a given HMM.
 +:* Consensus: calculate the consensus of the HMM.
 + 
 +===SearchDB===
 +SearchDB menu allows to search in sequence databases which are currently installed at CEINGE. It is possible to search by using:
 +:* HMMsearch

Revision as of 11:24, 21 June 2007

HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.

Align

Align menu allows to align sequences to a given HMM.

  • Sequences

Extract

Extract menu allows to extract features from a HMM.

  • Sequences: compute a number of sequences compatible with a given HMM.
  • Consensus: calculate the consensus of the HMM.

SearchDB

SearchDB menu allows to search in sequence databases which are currently installed at CEINGE. It is possible to search by using:

  • HMMsearch
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