Capri HMM page
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| HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file. | HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file. | ||
| - | + | [[Image:Capri_HMM_page.gif|right]] | |
| ===Align=== | ===Align=== | ||
| Align menu allows to align sequences to a given HMM. | Align menu allows to align sequences to a given HMM. | ||
Current revision
HMM page allows the analysis of Hidden Markov Models. HMM is a position-specific scoring system suitable for searching databases for remotely homologous sequences which is derived from the analysis of a multiple sequence alignment. User cannot past data in directly in this page but can upload data from a file.
[edit] Align
Align menu allows to align sequences to a given HMM.
- Sequences
[edit] Extract
Extract menu allows to extract features from a HMM.
- Sequences: compute a number of sequences compatible with a given HMM.
- Consensus: calculate the consensus of the HMM.
[edit] SearchDB
SearchDB menu allows to search in sequence databases which are currently installed at CEINGE. It is possible to search by using:
- HMMsearch
