SRS databases

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-==SRS databases==+Aboout 70 DBs are locally mantained and available at CEINGE. [[SRS]] is used as the main web interface for accessing to these biological databases.
-===SRS databases at CEINGE===+An automatic procedure, specifically developed, takes care to mantain the databases up to date: every night public servers are checked and, in case of new releases, the new file data are downloaded and automatically indexed.<br>
-At CEINGE, [[SRS]] is used as the main web interface for accessing to biological databases.+Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of over 2 terabyte of HD space.
-An automatic procedure specifically developed takes care to mantain the databases up to date: every night public servers are checked for the presence of new releases: in case of new releases, the new file data are downloaded and automatically indexed.<br>+ 
-Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of about 1 Tbyte (1000 Gigabytes) of HD space.+The complete list of all the available databases on SRS is findable [http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+databanks here].
===Available databases=== ===Available databases===
Practically all the most used public databases are available, such as: Practically all the most used public databases are available, such as:
-*'''DNA databases''':+*[[DNA databases]]
-**EMBL, divided in its sections;+*[[Protein databases]]
-**REFESEQN, including daily updates;+*[[Gene-related databases]]
-**FANTOM1;+*[[Protein-related databases]]
-*'''PROTEIN databases''':+*[[Ontology databases]]
-**UNIPROT, as the sections UNIPROT-SWISSPROT and UNIPROT-TREMBL;+*[[3D structures databases]]
-**REFSEQP, including daily updates;+*[[Metabolic pathway databases]]
-**IPI;+*[[Reference databases]]
-*'''GENE-related databases''':+
-**UNIGENE and UNISEQ;+
-**ENTREZGENE;+
-**HSAGENS;+
-*'''PROTEIN-related databases''':+
-**INTERPRO;+
-**PRODOM;+
-**PFAM as PFAMA, PFAMB, SWISSPFAM, PFAMHMM;+
-**BLOCKS;+
-**PROSITE and PROSITEDOC;+
-**PRINTS;+
-**UNIREF;+
-*'''ONTOLOGIES databases''':+
-**GO;+
-**GOA;+
-*'''3D structures databases''':+
-**PDB and PDBFINDER;+
-*'''Methabolic pathway databases''':+
-**PATHWAY;+
-**ENZYME;+
-*'''Reference databases''':+
-**TAXONOMY;+
-**GENETICCODE;+
-**OMIM;+
-**REBASE;+
-<br>+
-and may others.+
- +
- +
- +
-===VECCHIO===+
- +
-;BLOCKS :Protein Domains+{{footer|footername=footer biotools}}
-;CD40LBASE :CD40 mutations+
-;EMBL :DNA Sequence Database+
-;EMBLCONTIGS :Contigs only +
-;EMBLTPA :Third part annotation sequences+
-;EMBLWGS :WGS DNA sequences+
-;ENSEMBL :Human chromosomes+
-;ENSEMBL_HUM_CDNA :Human cDNA+
-;ENSEMBL_HUM_PEP :Human proteins+
-;ENTREZGENE:Genes Classification database+
-;ENZYME :Enzyme Classification+
-;EPD :Eukaryotic Promoter+
-;FANTOM :Mouse cDNA +
-;G6PD :G6PD mutations+
-;GENETICCODE :Geneic Codes+
-;GO :Ontologies+
-;GOA :Ontologies+
-;HGBASE :SNP database+
-;HSAGENES :Human gene classification+
-;IMGT :Immunoglobulins only sequences+
-;IMGTHLA :HLA only sequences+
-;INTERPRO :Protein Domains+
-;IPI :Protein Sequence Database+
-;LCOMPOUND:Methabolic Pathways+
-;LDLR :LDLR mutations+
-;LENZYME:Methabolic Pathways+
-;LOCUSLINK :Loci+
-;NRL3D :Proteins from PDB+
-;OMIM :Mendelian diseases+
-;OMIMALLELE :Mendelian diseases alleles+
-;P53 :P53 mutations+
-;PATHWAY:Methabolic Pathways+
-;PDB :Protein structure database+
-;PDBFINDER :Protein structure database+
-;PFAMA :Protein families +
-;PFAMB :Protein families +
-;PFAMHMM :Protein families +
-;PFAMSEED :Protein families +
-;PIR :Protein Sequence Database+
-;PRINTS :Protein Domains+
-;PRODOM :Protein families +
-;PROSITE :Protein Domains+
-;PROSITEDOC :Protein Domains+
-;REBASE :Restriction Enzymes daabase+
-;REMTREMBL :Protein Sequence Database+
-;RHDB :Radiation Hybrid Maps+
-;RHEXP :Radiation Hybrid Maps+
-;RHMAP :Radiation Hybrid Maps+
-;RHPANEL :Radiation Hybrid Maps+
-;SPTREMBL :Protein Sequence Database+
-;SWALL :Protein Sequence Database+
-;SWISSPFAM :Protein families +
-;SWISSPROT :Protein Sequence Database+
-;TAXONOMY :Organism Taxonomy+
-;TFCELL :Transcriptional Factor +
-;TFCLASS :Transcriptional Factor +
-;TFFACTOR :Transcriptional Factor +
-;TFGENE :Transcriptional Factor +
-;TFMATRIX :Transcriptional Factor +
-;TFSITE :Transcriptional Factor +
-;TREMBL :Translation of EMBL coding+
-;TREMBLNEW :Protein Sequence Database+
-;UNIGENE :Gene database+
-;UNIPROT:Protein Sequence Database+
-;UNIREF:Protein Sequence Database+
-;UNISEQ :DNA Sequence Database+

Current revision

Aboout 70 DBs are locally mantained and available at CEINGE. SRS is used as the main web interface for accessing to these biological databases. An automatic procedure, specifically developed, takes care to mantain the databases up to date: every night public servers are checked and, in case of new releases, the new file data are downloaded and automatically indexed.
Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of over 2 terabyte of HD space.

The complete list of all the available databases on SRS is findable here.

[edit] Available databases

Practically all the most used public databases are available, such as:

Bioinformatics: Bioinfo Services: Bioinfo programs - Databases - Local facilities - Research DB
Retrieved from "http://mediawiki.ceinge.unina.it/index.php/SRS_databases"
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