SRS databases
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Current revision (00:59, 28 June 2007) (edit) (undo) Giovanni (Talk | contribs) |
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| Aboout 70 DBs are locally mantained and available at CEINGE. [[SRS]] is used as the main web interface for accessing to these biological databases. | Aboout 70 DBs are locally mantained and available at CEINGE. [[SRS]] is used as the main web interface for accessing to these biological databases. | ||
| - | An automatic procedure specifically developed takes care to mantain the databases up to date: every night public servers are checked | + | An automatic procedure, specifically developed, takes care to mantain the databases up to date: every night public servers are checked and, in case of new releases, the new file data are downloaded and automatically indexed.<br> |
| Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of over 2 terabyte of HD space. | Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of over 2 terabyte of HD space. | ||
| - | The complete list of all the available databases on SRS is | + | The complete list of all the available databases on SRS is findable [http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+databanks here]. |
| ===Available databases=== | ===Available databases=== | ||
| Practically all the most used public databases are available, such as: | Practically all the most used public databases are available, such as: | ||
| *[[DNA databases]] | *[[DNA databases]] | ||
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| *[[Protein databases]] | *[[Protein databases]] | ||
| *[[Gene-related databases]] | *[[Gene-related databases]] | ||
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| *[[Protein-related databases]] | *[[Protein-related databases]] | ||
| *[[Ontology databases]] | *[[Ontology databases]] | ||
| - | |||
| *[[3D structures databases]] | *[[3D structures databases]] | ||
| - | * | + | *[[Metabolic pathway databases]] |
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| *[[Reference databases]] | *[[Reference databases]] | ||
| - | **''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+TAXONOMY TAXONOMY]'': Contains names of all organisms represented in sequence databases by at least one nucleotide or protein sequence | ||
| - | **''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+GENETICCODE GENETICCODE]'': NCBI database of genetic codes | ||
| - | **''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+OMIM OMIM]'': Online Mendelian Inheritance in Man database. | ||
| - | **''[http://bioinfo.ceinge.unina.it/srs7131bin/cgi-bin/wgetz?_AUTHS_-AUTHE_-page+LibInfo+-lib+REBASE REBASE]'': Restriction Enzyme database. | ||
| {{footer|footername=footer biotools}} | {{footer|footername=footer biotools}} | ||
Current revision
Aboout 70 DBs are locally mantained and available at CEINGE. SRS is used as the main web interface for accessing to these biological databases.
An automatic procedure, specifically developed, takes care to mantain the databases up to date: every night public servers are checked and, in case of new releases, the new file data are downloaded and automatically indexed.
Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of over 2 terabyte of HD space.
The complete list of all the available databases on SRS is findable here.
[edit] Available databases
Practically all the most used public databases are available, such as:
- DNA databases
- Protein databases
- Gene-related databases
- Protein-related databases
- Ontology databases
- 3D structures databases
- Metabolic pathway databases
- Reference databases
