SRS databases
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SRS databases
SRS databases at CEINGE
At CEINGE, SRS is used as the main web interface for accessing to biological databases.
An automatic procedure specifically developed takes care to mantain the databases up to date: every night public servers are checked for the presence of new releases: in case of new releases, the new file data are downloaded and automatically indexed.
Through SRS, more than 60 public databases are available at CEINGE, stored as flat-files on a dedicated file server, for a total of about 1 Tbyte (1000 Gigabytes) of HD space.
Available databases
Practically all the most used public databases are available:
- DNA databases:
- EMBL, divided as the main sections EMBLRELEASE, EMBLCONTIGS, EMBLWGS, EMBLNEW;
- REFESEQN, including daily updates;
- FANTOM1.
- PROTEIN databases:
- UNIPROT, as the sections UNIPROT-SWISSPROT and UNIPROT-TREMBL
- REFSEQP, including daily updates.
- GENE-related databases:
- UNIGENE and UNISEQ;
- ENTREZGENE;
- HSAGENS;
- PROTEIN-related databases:
- INTERPRO;
- PRODOM;
- PFAM as PFAMA, PFAMB, SWISSPFAM, PFAMHMM;
- BLOCKS;
- PROSITE and PROSITEDOC;
- PRINTS;
VECCHIO
- BLOCKS
- Protein Domains
- CD40LBASE
- CD40 mutations
- EMBL
- DNA Sequence Database
- EMBLCONTIGS
- Contigs only
- EMBLTPA
- Third part annotation sequences
- EMBLWGS
- WGS DNA sequences
- ENSEMBL
- Human chromosomes
- ENSEMBL_HUM_CDNA
- Human cDNA
- ENSEMBL_HUM_PEP
- Human proteins
- ENTREZGENE
- Genes Classification database
- ENZYME
- Enzyme Classification
- EPD
- Eukaryotic Promoter
- FANTOM
- Mouse cDNA
- G6PD
- G6PD mutations
- GENETICCODE
- Geneic Codes
- GO
- Ontologies
- GOA
- Ontologies
- HGBASE
- SNP database
- HSAGENES
- Human gene classification
- IMGT
- Immunoglobulins only sequences
- IMGTHLA
- HLA only sequences
- INTERPRO
- Protein Domains
- IPI
- Protein Sequence Database
- LCOMPOUND
- Methabolic Pathways
- LDLR
- LDLR mutations
- LENZYME
- Methabolic Pathways
- LOCUSLINK
- Loci
- NRL3D
- Proteins from PDB
- OMIM
- Mendelian diseases
- OMIMALLELE
- Mendelian diseases alleles
- P53
- P53 mutations
- PATHWAY
- Methabolic Pathways
- PDB
- Protein structure database
- PDBFINDER
- Protein structure database
- PFAMA
- Protein families
- PFAMB
- Protein families
- PFAMHMM
- Protein families
- PFAMSEED
- Protein families
- PIR
- Protein Sequence Database
- PRINTS
- Protein Domains
- PRODOM
- Protein families
- PROSITE
- Protein Domains
- PROSITEDOC
- Protein Domains
- REBASE
- Restriction Enzymes daabase
- REMTREMBL
- Protein Sequence Database
- RHDB
- Radiation Hybrid Maps
- RHEXP
- Radiation Hybrid Maps
- RHMAP
- Radiation Hybrid Maps
- RHPANEL
- Radiation Hybrid Maps
- SPTREMBL
- Protein Sequence Database
- SWALL
- Protein Sequence Database
- SWISSPFAM
- Protein families
- SWISSPROT
- Protein Sequence Database
- TAXONOMY
- Organism Taxonomy
- TFCELL
- Transcriptional Factor
- TFCLASS
- Transcriptional Factor
- TFFACTOR
- Transcriptional Factor
- TFGENE
- Transcriptional Factor
- TFMATRIX
- Transcriptional Factor
- TFSITE
- Transcriptional Factor
- TREMBL
- Translation of EMBL coding
- TREMBLNEW
- Protein Sequence Database
- UNIGENE
- Gene database
- UNIPROT
- Protein Sequence Database
- UNIREF
- Protein Sequence Database
- UNISEQ
- DNA Sequence Database
