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- Eukaryotic CSTs (4,353 bytes)
3: ...laborative effort with a small group of italian research institutes and currently maintained at CEINGE, an...
5: ...s, and their functional roles should therefore be searched out of the context of protein coding: transcrip...
9: ...oach we identify transcriptionally active modules searching (within CSTs) for clusters recognized by more ...
13: ... can be fed to clustering algorithms, in order to search for similarities among sequence annotations, able...
16: ...ents associated to disease genes. NUCLEIC ACIDS RESEARCH. vol. 33 pp. D505-D510 ISSN: 0305-1048 - Research Activity (3,619 bytes)
1: ...s insects and other invertebrates. CSTs have been searched in the genomic regions including and surroundin...
3: ...have been used as a model system, and analyzed in search of families of repeated sequence elements charact...
10: == [[Research lines]] ==
20: ...ents associated to disease genes. NUCLEIC ACIDS RESEARCH. vol. 33 pp. D505-D510 ISSN: 0305-1048 - Mail (5,648 bytes)
60: The virus search is based on a lookup of a database, continuously ... - CAPRI (4,014 bytes)
1: ...c site. CAPRI project was born to guarantee the researchers an easy access to many widely used sequence an...
18: ...ser can edit, translate or align its sequences or search within the installed databases. Top menu bar chan...
22: ...an edit, back-translate or align its sequences or search within the installed databases. Top menu bar beha...
29: ...a position-specific scoring system, suitable for searching databases with patterns derived from the analy... - BLAST (3,183 bytes)
1: BLAST (Basic Local Alignment Search Tool) is an algorithm for comparing biological se...
5: :BLAST utilities can be searched and launched from the [http://bioinfo.ceinge.un...
21: :*'''Blastpgp''' : perform ''iterative searches'', in two different modes:
22: ...used to build a score model for the next round of searching.
29: ...d PSI-BLAST: a new generation of protein database search programs''', ''Nucleic Acids Res.'', 1997, 25:33... - SRS (2,099 bytes)
1: ... house are easily integrated into SRS, allowing researchers to compare and link local data with public one...
6: ...llowing rapid retrieval of data which satisfy the search criteria. SRS also allows to create personal view...
11: ...with each other and with locally produced data. Researcher can also create personal projects and store, re... - PROGsDB (514 bytes)
2: ...s ''Nucleic:Similarity Search, Protein:Similarity Search'') or by words in their description. - Capri Protein page (3,823 bytes)
1: ...an edit, back-translate or align its sequences or search within the installed databases. Top menu bar chan...
31: ===Search===
32: ...r entities in a given sequence. It is possible to search:
48: ===SearchDB===
49: ... currently installed at CEINGE. It is possible to search by using: - Capri DNA page (4,138 bytes)
1: ...ser can edit, translate or align its sequences or search within the installed databases. Top menu bar chan...
34: ===Search===
35: ...r entities in a given sequence. It is possible to search:
59: ===SearchDB===
60: ... currently installed at CEINGE. It is possible to search by using: - Capri HMM page (775 bytes)
1: ... a position-specific scoring system suitable for searching databases for remotely homologous sequences wh...
12: ===SearchDB===
13: ... currently installed at CEINGE. It is possible to search by using:
14: :* HMMsearch - HMMER (2,400 bytes)
2: Profile hidden Markov models (HMMs) are used for searching databases using a statistical description of a...
3: ...nnected both with the Bioinformatic service and research group activity. For example, it has been used for...
6: :HMMER applications can be searched and launched from the [http://bioinfo.ceinge.un...
14: ...ameters for a profile HMM prior to doing database searches.
17: ...e.unina.it/tools/winterf/hmmpfam.php hmmpfam]''': Search a profile HMM database with a sequence (i.e., ann... - Bioinfo tools (1,815 bytes)
1: ...hough command line access remains an option for researchers more familiar with the Unix interface. Fast an... - Storage of experimental data (1,153 bytes)
3: ...ical images together with information about the research plan, the cell line, colture conditions and the s...
5: ...riment is easily connected to the corresponding research project and provides information about the sample... - Bioinfo programs (1,669 bytes)
1: ...hough command line access remains an option for researchers more familiar with the Unix interface. Fast an... - Smb ceinge for Ms Windows XP (527 bytes)
1: ...orrect entry in the "Start" menu and click on the Search button to enter the ceinge server name:
3: [[Image:smbWinxpSearch.jpg]]
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